DeTEXT: A Database for Evaluating Text Extraction from Biomedical Literature Figures
Identifieur interne : 000049 ( Main/Exploration ); précédent : 000048; suivant : 000050DeTEXT: A Database for Evaluating Text Extraction from Biomedical Literature Figures
Auteurs : Xu-Cheng Yin [République populaire de Chine] ; Chun Yang [République populaire de Chine] ; Wei-Yi Pei [République populaire de Chine] ; Haixia Man [République populaire de Chine] ; Jun Zhang [République populaire de Chine] ; Erik Learned-Miller [États-Unis] ; Hong Yu [États-Unis]Source :
- PLoS ONE [ 1932-6203 ] ; 2015.
Abstract
Hundreds of millions of figures are available in biomedical literature, representing important biomedical experimental evidence. Since text is a rich source of information in figures, automatically extracting such text may assist in the task of mining figure information. A high-quality ground truth standard can greatly facilitate the development of an automated system. This article describes
Url:
DOI: 10.1371/journal.pone.0126200
PubMed: 25951377
PubMed Central: 4423993
Affiliations:
- République populaire de Chine, États-Unis
- Massachusetts
- Amherst (Massachusetts), Pékin
- Université du Massachusetts à Amherst
Links toward previous steps (curation, corpus...)
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- to stream Main, to step Curation: 000049
Le document en format XML
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type="wicri:Area/Main/Curation">000049</idno><idno type="wicri:Area/Main/Exploration">000049</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">DeTEXT: A Database for Evaluating Text Extraction from Biomedical Literature Figures</title><author><name sortKey="Yin, Xu Cheng" sort="Yin, Xu Cheng" uniqKey="Yin X" first="Xu-Cheng" last="Yin">Xu-Cheng Yin</name><affiliation wicri:level="3"><nlm:aff id="aff001"><addr-line>Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Yang, Chun" sort="Yang, Chun" uniqKey="Yang C" first="Chun" last="Yang">Chun Yang</name><affiliation wicri:level="3"><nlm:aff id="aff001"><addr-line>Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Pei, Wei Yi" sort="Pei, Wei Yi" uniqKey="Pei W" first="Wei-Yi" last="Pei">Wei-Yi Pei</name><affiliation wicri:level="3"><nlm:aff id="aff001"><addr-line>Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Man, Haixia" sort="Man, Haixia" uniqKey="Man H" first="Haixia" last="Man">Haixia Man</name><affiliation wicri:level="3"><nlm:aff id="aff002"><addr-line>School of Foreign Studies, University of Science and Technology Beijing, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Foreign Studies, University of Science and Technology Beijing, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhang, Jun" sort="Zhang, Jun" uniqKey="Zhang J" first="Jun" last="Zhang">Jun Zhang</name><affiliation wicri:level="3"><nlm:aff id="aff001"><addr-line>Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Computer Science and Technology, School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Learned Miller, Erik" sort="Learned Miller, Erik" uniqKey="Learned Miller E" first="Erik" last="Learned-Miller">Erik Learned-Miller</name><affiliation wicri:level="4"><nlm:aff id="aff003"><addr-line>School of Computer Science, University of Massachusetts Amherst, MA, USA</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Computer Science, University of Massachusetts Amherst, MA</wicri:regionArea><placeName><region type="state">Massachusetts</region><settlement type="city">Amherst (Massachusetts)</settlement></placeName><orgName type="university">Université du Massachusetts à Amherst</orgName></affiliation></author><author><name sortKey="Yu, Hong" sort="Yu, Hong" uniqKey="Yu H" first="Hong" last="Yu">Hong Yu</name><affiliation wicri:level="4"><nlm:aff id="aff003"><addr-line>School of Computer Science, University of Massachusetts Amherst, MA, USA</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Computer Science, University of Massachusetts Amherst, MA</wicri:regionArea><placeName><region type="state">Massachusetts</region><settlement type="city">Amherst (Massachusetts)</settlement></placeName><orgName type="university">Université du Massachusetts à Amherst</orgName></affiliation><affiliation wicri:level="2"><nlm:aff id="aff004"><addr-line>Department of Quantitative Health Sciences, University of Massachusetts Medical School, MA, USA</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Quantitative Health Sciences, University of Massachusetts Medical School, MA</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Hundreds of millions of figures are available in biomedical literature, representing important biomedical experimental evidence. Since text is a rich source of information in figures, automatically extracting such text may assist in the task of mining figure information. A high-quality ground truth standard can greatly facilitate the development of an automated system. This article describes <bold>D</bold>e<bold>TEXT</bold>: A database for evaluating text extraction from biomedical literature figures. It is the first publicly available, human-annotated, high quality, and large-scale figure-text dataset with 288 full-text articles, 500 biomedical figures, and 9308 text regions. This article describes how figures were selected from open-access full-text biomedical articles and how annotation guidelines and annotation tools were developed. We also discuss the inter-annotator agreement and the reliability of the annotations. We summarize the statistics of the <bold>D</bold>e<bold>TEXT</bold> data and make available evaluation protocols for <bold>D</bold>e<bold>TEXT</bold>. Finally we lay out challenges we observed in the automated detection and recognition of figure text and discuss research directions in this area. <bold>D</bold>e<bold>TEXT</bold> is publicly available for downloading at <ext-link ext-link-type="uri" xlink:href="http://prir.ustb.edu.cn/DeTEXT/">http://prir.ustb.edu.cn/DeTEXT/</ext-link>.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Shatkay, H" uniqKey="Shatkay H">H Shatkay</name></author><author><name sortKey="Chen, N" uniqKey="Chen N">N Chen</name></author><author><name sortKey="Blostein, D" uniqKey="Blostein D">D Blostein</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yu, H" uniqKey="Yu H">H Yu</name></author><author><name sortKey="Lee, M" uniqKey="Lee M">M Lee</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hearst, Ma" uniqKey="Hearst M">MA Hearst</name></author><author><name sortKey="Divoli, A" 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Sitnikov</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li><li>États-Unis</li></country><region><li>Massachusetts</li></region><settlement><li>Amherst (Massachusetts)</li><li>Pékin</li></settlement><orgName><li>Université du Massachusetts à Amherst</li></orgName></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Yin, Xu Cheng" sort="Yin, Xu Cheng" uniqKey="Yin X" first="Xu-Cheng" last="Yin">Xu-Cheng Yin</name></noRegion><name sortKey="Man, Haixia" sort="Man, Haixia" uniqKey="Man H" first="Haixia" last="Man">Haixia Man</name><name sortKey="Pei, Wei Yi" sort="Pei, Wei Yi" uniqKey="Pei W" first="Wei-Yi" last="Pei">Wei-Yi Pei</name><name sortKey="Yang, Chun" sort="Yang, Chun" uniqKey="Yang C" first="Chun" last="Yang">Chun Yang</name><name sortKey="Zhang, Jun" sort="Zhang, Jun" uniqKey="Zhang J" first="Jun" last="Zhang">Jun Zhang</name></country><country name="États-Unis"><region name="Massachusetts"><name sortKey="Learned Miller, Erik" sort="Learned Miller, Erik" uniqKey="Learned Miller E" first="Erik" last="Learned-Miller">Erik Learned-Miller</name></region><name sortKey="Yu, Hong" sort="Yu, Hong" uniqKey="Yu H" first="Hong" last="Yu">Hong Yu</name><name sortKey="Yu, Hong" sort="Yu, Hong" uniqKey="Yu H" first="Hong" last="Yu">Hong Yu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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